How do you calculate post-test probability?
Convert the pre-test probability to odds with p / (1 − p), multiply by the likelihood ratio of the test result, then convert back with odds / (1 + odds). For a 30% pre-test probability and an LR of 8.5: 0.429 × 8.5 = 3.64 odds, which is a post-test probability of about 78.5%.
How do you get likelihood ratios from sensitivity and specificity?
The positive likelihood ratio is sensitivity / (1 − specificity) and the negative likelihood ratio is (1 − sensitivity) / specificity, with both values as fractions. A test with 85% sensitivity and 90% specificity has LR+ = 0.85 / 0.10 = 8.5 and LR− = 0.15 / 0.90 ≈ 0.17. At exactly 100% specificity LR+ is undefined.
What pre-test probability should I use?
Use the best estimate for the patient in front of you: the prevalence of the disease in a similar setting, adjusted for the history and examination, or the output of a validated clinical prediction score. Pre-test probability varies by setting, so a test with fixed likelihood ratios can lead to very different post-test probabilities.
Is the Fagan nomogram the same as Bayes' theorem?
Yes. The nomogram is Bayes' theorem in odds form drawn on log scales: post-test odds equal pre-test odds times the likelihood ratio. Drawing the line gives a quick visual estimate, while calculating gives the exact value. This calculator does both, so you can check the drawing against the numbers.
What are the limits of the Fagan nomogram?
It is only as good as its inputs. Likelihood ratios come from studies whose patients may differ from yours, pre-test probability is an estimate, and applying several tests in a row by multiplying their LRs assumes the tests are independent, which is often untrue. Use the result to support clinical judgement, not to replace it.